X11 losing focus

Lazarus18

In debt medical student
I am using Apple's X11 and my windows lose focus somehow. X11 stays the topmost ap, but the windows within that are not focused. For example I can ssh into a different computer and open Netscape on it. I can start typing the URL I'd like to visit and somewhere in that typing I get beeps for every keystroke and no more letters show up. The window now has a translucent top, showing it's not in focus anymore.

I've tried turning off all the options in preferences that allow OS X key mappings to be overlaid, etc. but nothing seems to change this behavior. Any ideas? Anyone else have this problem?
 
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