<sigh> I already explained, in your other thread, how to fix this. Go to the directory you are trying to run configure from, then issue these commands:
cp /usr/share/libtool/config.guess .
cp /usr/share/libtool/config.sub .
cp /usr/share/libtool/ltmain.sh .
cp /usr/share/automake-1.6/install-sh .
cp /usr/share/automake-1.6/missing .
cp /usr/share/automake-1.6/mkinstalldirs .
Yes, I know you already have these files. The thing is, these are old versions of these files that don't know anything about Darwin. If you replace the old files with these ones, you will be able to compile.