This post is mostly in reply to bellboy's previous post.
First, I like your ideas for the Apple menu. However, since this is a new interface and all, why not keep it the "Go" menu. "Go" is much more intuitive than an Apple in the corner. Go would be available in all apps, where the top portion (i.e. the stable, non-moving portion) would be system-wide links, and a subsection below that links specific to navigating the currently selected application.
Second, I disagree that Quit should be moved to the File menu. Yes, I'm use to it, and so is everyone else, and yes, I feel "uncomfortable" whenever I automatically open "File" and can't find it there. However, this level of uncomfortability actually HELPS in that when I do find Quit under the App menu, I absolute know, 100%, that the windows in the named Application are going to go away. I believe in this case, the location of the Quit menu is a user preference (like click-to-front windows vs. window-to-front-on-hover) that simply just takes getting used to. That said, the proper place for it is in the App menu. You don't Quit a file, you close it. You Quit an App.
Thirdly, the App menu needs to stay in the upper left hand corner along with all the other App-related menus. Putting it in the upper right signifies to the user that the menus is unrelated to the current application, which is bad. I don't really have a suggestion for what should go in the upper right, except for maybe the time, and an Application Switcher.
Fourth, "File" should only have the functions regarding the currently selected File. These would be Close, Clone, Save, Save As, Print, etc. The current File->New menu item should probably be App->New File.
Finally, all applications on the dock should repeat its respective App menu in a contextual window. If it is a document, it should repeat the File menu. Edit should be called "Selection", "Preferences" should be under App, "File Preferences" should be under File (for prefs with File scope only). There should be a list of open document windows in App.
Whew.
Anyway, my $0.2. Nothing will probably ever come of my suggestions anyway -- just thought it had to be said
Mike